Help us improve by providing feedback or contacting help@jisc.ac.uk
N W

Nicole Wheeler

Employment

OrganisationRoleDepartmentStart dateEnd date
The University of BirminghamNot specifiedNot specified
University of BirminghamNot specifiedNot specified
Wellcome Sanger InstituteData ScientistNot specified2018-08-012020-08-01
Wellcome Trust Sanger InstitutePostdoctoral FellowNot specified2017-05-082018-07-31

Education

OrganisationDegree/titleDepartmentStart dateEnd date
University of CanterburyPhD, BiochemistryNot specified2014-02-282017-02-28

Works

TitleDOIPublished date
Infection by Clonally Related Mycobacterium abscessus Isolates: The Role of Drinking Water10.1164/rccm.202409-1824OC2025-05
Biased sampling confounds machine learning prediction of antimicrobial resistance10.1101/2025.01.07.6317732025-01-10
Progress and Prospects for a Nucleic Acid Screening Test Set10.1089/apb.2023.00332024-09-01
Developing a Common Global Baseline for Nucleic Acid Synthesis Screening10.1089/apb.2023.00342024-06-01
Evidence review and recommendations for the implementation of genomics for antimicrobial resistance surveillance: reports from an international expert group10.1016/s2666-5247(23)00281-12023-12
Innovations in genomic antimicrobial resistance surveillance10.1016/s2666-5247(23)00285-92023-12
The Convergence of Artificial Intelligence and the Life SciencesNo DOI available.2023-10-30
Beyond Biosecurity by Taxonomic Lists: Lessons, Challenges, and Opportunities10.1089/hs.2022.01092023-10-19
Ten simple rules for the sharing of bacterial genotype—Phenotype data on antimicrobial resistance10.1371/journal.pcbi.10111292023-06-22
Gauge your phage: benchmarking of bacteriophage identification tools in metagenomic sequencing data10.1186/s40168-023-01533-x2023-04-21
Safety by Design: Biosafety and Biosecurity in the Age of Synthetic Genomics10.1016/j.isci.2023.1061652023-02
Rapid Genomic Characterization and Global Surveillance of Klebsiella Using Pathogenwatch10.1093/cid/ciab7842021-12-01
Rapid Genomic Characterization and Global Surveillance of Klebsiella Using Pathogenwatch10.1101/2021.06.22.4489672021-06-22
Gauge your phage: Benchmarking of bacteriophage identification tools in metagenomic sequencing data10.1101/2021.04.12.4387822021-04-12
Increased power from conditional bacterial genome-wide association identifies macrolide resistance mutations in Neisseria gonorrhoeae10.1038/s41467-020-19250-62020-10-23
Improved Prediction of Bacterial Genotype-Phenotype Associations Using Interpretable Pangenome-Spanning Regressions10.1101/8524262020-08-25
Adaptation to the cervical environment is associated with increased antibiotic susceptibility in Neisseria gonorrhoeae10.1038/s41467-020-17980-12020-08-17
Evolution of Salmonella enterica serotype Typhimurium driven by anthropogenic selection and niche adaptation10.1371/journal.pgen.10088502020-06-08
Computer says …10.1111/1740-9713.014042020-06
Lean, mean, learning machines10.1038/s41579-020-0357-42020
Whole-genome sequencing as part of national and international surveillance programmes for antimicrobial resistance: A roadmap10.1136/bmjgh-2019-0022442020
Contrasting approaches to genome-wide association studies impact the detection of resistance mechanisms in Staphylococcus aureus10.1101/7581442019-09-04
Evaluation of parameters affecting performance and reliability of machine learning-based antibiotic susceptibility testing from whole genome sequencing data10.1371/journal.pcbi.10073492019-09-03
We are falling behind on TB elimination targets: can whole-genome sequencing guide our efforts?10.1136/thoraxjnl-2019-2130982019-09
Tracing outbreaks with machine learning10.1038/s41579-019-0153-12019-05
Convergent regulatory evolution and loss of flight in paleognathous birds10.1126/science.aat72442019-04-05
An African Salmonella Typhimurium ST313 sublineage with extensive drug-resistance and signatures of host adaptation10.1038/s41467-019-11844-z2019
Genomic correlates of extraintestinal infection are linked with changes in cell morphology in Campylobacter jejuni10.1099/mgen.0.0002512019
Joint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis10.1038/s41467-019-09976-32019
Machine learning identifies signatures of host adaptation in the bacterial pathogen Salmonella enterica10.1371/journal.pgen.10073332018-05-08
Breaking the code of antibiotic resistance10.1038/nrmicro.2018.332018
Genomic, Transcriptomic, and Phenotypic Analyses of Neisseria meningitidis Isolates from Disease Patients and Their Household Contacts10.1128/msystems.00127-172017-12-26
Why so narrow: Distribution of anti-sense regulated, type I toxin-antitoxin systems compared with type II and type III systems10.1080/15476286.2016.12727472017
A profile-based method for identifying functional divergence of orthologous genes in bacterial genomes10.1093/bioinformatics/btw5182016
Robust Identification of Noncoding RNA from Transcriptomes Requires Phylogenetically-Informed Sampling10.1371/journal.pcbi.10039072014

Octopus publications

Search options
0 results

Red flags raised by this user

0 results